Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.14" 2022-01-18; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact/ -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Benchmark_Kit30/CapM5-CapM6                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  175,492,424
 Normal Paired: 73,253,407 (41.74%)
 Chimeric Paired: 84,395,545 (48.09%)
 Chimeric Ambiguous: 16,183,003 (9.22%)
 Unmapped: 1,660,469 (0.95%)
 Ligation Motif Present: 83,320,269 (47.48%)
Alignable (Normal+Chimeric Paired): 157,648,952 (89.83%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-03-19T19:47:22,242]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 129,974,561 (74.06%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 27,674,391 (15.77%)
Library Complexity Estimate: 0
Intra-fragment Reads: 16,610,187 (9.46% / 12.78%)
Below MAPQ Threshold: 12,603,782 (7.18% / 9.70%)
Hi-C Contacts: 100,760,592 (57.42% / 77.52%)
 Ligation Motif Present: 48,561,248  (27.67% / 37.36%)
 3' Bias (Long Range): 68% - 32%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 28,936,863  (16.49% / 22.26%)
Intra-chromosomal: 71,823,729  (40.93% / 55.26%)
Short Range (<20Kb): 19,757,878  (11.26% / 15.20%)
Long Range (>20Kb): 52,065,816  (29.67% / 40.06%)